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Gm53173 predicted gene, 53173 [ Mus musculus (house mouse) ]

Gene ID: 102633347, updated on 17-Aug-2024

Summary

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Official Symbol
Gm53173provided by MGI
Official Full Name
predicted gene, 53173provided by MGI
Primary source
MGI:MGI:6508691
See related
AllianceGenome:MGI:6508691
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm26708
Expression
Broad expression in testis adult (RPKM 3.1), colon adult (RPKM 1.0) and 16 other tissues See more
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Genomic context

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See Gm53173 in Genome Data Viewer
Location:
7 D3; 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (83882210..83916237)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (84233002..84267029)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26708 Neighboring gene predicted gene, 53174 Neighboring gene STARR-seq mESC enhancer starr_19430 Neighboring gene predicted gene, 22177 Neighboring gene STARR-seq mESC enhancer starr_19431 Neighboring gene predicted gene 44827 Neighboring gene STARR-seq mESC enhancer starr_19433 Neighboring gene STARR-seq mESC enhancer starr_19435 Neighboring gene aryl hydrocarbon receptor nuclear translocator 2 Neighboring gene predicted gene, 25790 Neighboring gene predicted gene, 30873

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Readthrough Gm53174

Readthrough gene: Gm53174, Included gene: Gm26708

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166539.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC101659

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    83882210..83916237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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