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9430053O09Rik RIKEN cDNA 9430053O09 gene [ Mus musculus (house mouse) ]

Gene ID: 102633149, updated on 17-Aug-2024

Summary

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Official Symbol
9430053O09Rikprovided by MGI
Official Full Name
RIKEN cDNA 9430053O09 geneprovided by MGI
Primary source
MGI:MGI:2442604
See related
AllianceGenome:MGI:2442604
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in whole brain E14.5 (RPKM 3.8), CNS E14 (RPKM 3.8) and 6 other tissues See more
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Genomic context

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See 9430053O09Rik in Genome Data Viewer
Location:
16; 16 C3.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (77190427..77219771, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (77393539..77422883, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41293 Neighboring gene STARR-positive B cell enhancer ABC_E10918 Neighboring gene ubiquitin specific peptidase 25 Neighboring gene STARR-seq mESC enhancer starr_41294 Neighboring gene STARR-seq mESC enhancer starr_41295 Neighboring gene predicted gene, 31258 Neighboring gene Mir99a and Mirlet7c-1 host gene (non-protein coding) Neighboring gene STARR-seq mESC enhancer starr_41297 Neighboring gene STARR-seq mESC enhancer starr_41299 Neighboring gene microRNA let7c-1 Neighboring gene microRNA 99a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes. Bulfone A, et al. J Neurosci, 2005 Aug 17. PMID 16107646, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    77190427..77219771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003951960.2 RNA Sequence

  2. XR_003951958.2 RNA Sequence

  3. XR_004939281.1 RNA Sequence

  4. XR_384978.3 RNA Sequence

  5. XR_004939280.1 RNA Sequence

  6. XR_004939279.1 RNA Sequence

  7. XR_876176.3 RNA Sequence

  8. XR_003951959.2 RNA Sequence

  9. XR_003951957.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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