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LOC102630485 probable glucuronoxylan glucuronosyltransferase IRX7 [ Citrus sinensis (sweet orange) ]

Gene ID: 102630485, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102630485
Gene description
probable glucuronoxylan glucuronosyltransferase IRX7
Locus tag
KPL70_024235
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102630485 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 8 NC_068563.1 (26792206..26794653)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 8 NC_023053.1 (18857666..18860138)

Chromosome 8 - NC_068563.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102629715 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucuronoxylan glucuronosyltransferase IRX7
Names
putative glucuronoxylan glucuronosyltransferase IRX7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068563.1 Reference DVS_A1.0 Primary Assembly

    Range
    26792206..26794653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006487953.4 → XP_006488016.1  probable glucuronoxylan glucuronosyltransferase IRX7 isoform X2

    Conserved Domains (1) summary
    pfam03016
    Location:100 → 395
    Exostosin; Exostosin family

  2. XM_006487952.4 → XP_006488015.1  probable glucuronoxylan glucuronosyltransferase IRX7 isoform X1

    Conserved Domains (1) summary
    pfam03016
    Location:103 → 398
    Exostosin; Exostosin family
Nucleotide Protein
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