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LOC102629877 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Citrus sinensis (sweet orange) ]

Gene ID: 102629877, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102629877
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Locus tag
KPL70_013048
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102629877 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 4 NC_068559.1 (26885898..26891356)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 7 NC_023052.1 (5247964..5252922, complement)

Chromosome 4 - NC_068559.1Genomic Context describing neighboring genes Neighboring gene putative potassium transporter 12 Neighboring gene potassium transporter 6 Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC102628926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Names
putative alpha/alpha-trehalose-phosphate synthase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068559.1 Reference DVS_A1.0 Primary Assembly

    Range
    26885898..26891356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006483754.4 → XP_006483817.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    See identical proteins and their annotated locations for XP_006483817.1

    UniProtKB/TrEMBL
    A0A067GUZ4
    Conserved Domains (1) summary
    cl28137
    Location:1 → 843
    Glyco_transf_20; Glycosyltransferase family 20

  2. XM_006483756.4 → XP_006483819.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    See identical proteins and their annotated locations for XP_006483819.1

    UniProtKB/TrEMBL
    A0A067GUZ4
    Conserved Domains (1) summary
    cl28137
    Location:1 → 843
    Glyco_transf_20; Glycosyltransferase family 20

  3. XM_006483757.4 → XP_006483820.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    See identical proteins and their annotated locations for XP_006483820.1

    UniProtKB/TrEMBL
    A0A067GUZ4
    Conserved Domains (1) summary
    cl28137
    Location:1 → 843
    Glyco_transf_20; Glycosyltransferase family 20

  4. XM_006483755.4 → XP_006483818.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    See identical proteins and their annotated locations for XP_006483818.1

    UniProtKB/TrEMBL
    A0A067GUZ4
    Conserved Domains (1) summary
    cl28137
    Location:1 → 843
    Glyco_transf_20; Glycosyltransferase family 20

  5. XM_025100434.2 → XP_024956202.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A067GUZ4
    Conserved Domains (1) summary
    cl28137
    Location:1 → 843
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
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