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CYP peptidyl-prolyl cis-trans isomerase-like [ Citrus sinensis (sweet orange) ]

Gene ID: 102623101, updated on 23-Nov-2023

Summary

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Gene symbol
CYP
Gene description
peptidyl-prolyl cis-trans isomerase-like
Locus tag
KPL70_023051
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See CYP in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 8 NC_068563.1 (8178014..8178591)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 8 NC_023053.1 (7470002..7470579)

Chromosome 8 - NC_068563.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 2 Neighboring gene uncharacterized LOC102622006 Neighboring gene probable magnesium transporter NIPA6 Neighboring gene eukaryotic translation initiation factor 4B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A redox 2-Cys mechanism regulates the catalytic activity of divergent cyclophilins. Campos BM, et al. Plant Physiol, 2013 Jul. PMID 23709667, Free PMC Article
  2. The Xanthomonas citri effector protein PthA interacts with citrus proteins involved in nuclear transport, protein folding and ubiquitination associated with DNA repair. Domingues MN, et al. Mol Plant Pathol, 2010 Sep. PMID 20696004, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Peptidyl-prolyl cis-trans isomerase-like
Names
cyclophilin
peptidyl-prolyl cis-trans isomerase CYP19-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289142.1 → NP_001276071.1  Peptidyl-prolyl cis-trans isomerase-like

    See identical proteins and their annotated locations for NP_001276071.1

    Status: PROVISIONAL

    Source sequence(s)
    GQ853548
    UniProtKB/TrEMBL
    A0A067D7H7, D0ELH5
    Conserved Domains (1) summary
    cd01926
    Location:4 → 169
    cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...

RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068563.1 Reference DVS_A1.0 Primary Assembly

    Range
    8178014..8178591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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