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LOC102614848 cellulose synthase A catalytic subunit 1 [UDP-forming] [ Citrus sinensis (sweet orange) ]

Gene ID: 102614848, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102614848
Gene description
cellulose synthase A catalytic subunit 1 [UDP-forming]
Locus tag
KPL70_000259
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102614848 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 1 NC_068556.1 (1957564..1964980, complement)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 7 NC_023052.1 (2698142..2705377)

Chromosome 1 - NC_068556.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102616217 Neighboring gene EG45-like domain containing protein Neighboring gene adenine nucleotide transporter BT1, chloroplastic/mitochondrial Neighboring gene hypothetical protein Neighboring gene transcription factor HY5 Neighboring gene protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 1 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068556.1 Reference DVS_A1.0 Primary Assembly

    Range
    1957564..1964980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006483275.4 → XP_006483338.1  cellulose synthase A catalytic subunit 1 [UDP-forming]

    See identical proteins and their annotated locations for XP_006483338.1

    UniProtKB/TrEMBL
    A0A067F2Z5, A0A067FE54
    Conserved Domains (3) summary
    PLN02400
    Location:1 → 1085
    PLN02400; cellulose synthase
    pfam14569
    Location:32 → 97
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:515 → 834
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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