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LOC102610218 cellulose synthase-like protein D1 [ Citrus sinensis (sweet orange) ]

Gene ID: 102610218, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102610218
Gene description
cellulose synthase-like protein D1
Locus tag
KPL70_026217
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102610218 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 9 NC_068564.1 (19334362..19339103)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 9 NC_023054.1 (8561783..8566378)

Chromosome 9 - NC_068564.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene MDIS1-interacting receptor like kinase 2-like Neighboring gene uncharacterized LOC102627504 Neighboring gene 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068564.1 Reference DVS_A1.0 Primary Assembly

    Range
    19334362..19339103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006489743.3 → XP_006489806.2  cellulose synthase-like protein D1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases