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LOC102607994 probable beta-1,3-galactosyltransferase 2 [ Citrus sinensis (sweet orange) ]

Gene ID: 102607994, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102607994
Gene description
probable beta-1,3-galactosyltransferase 2
Locus tag
KPL70_003828
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102607994 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 2 NC_068557.1 (18963569..18967977)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 2 NC_023047.1 (18396715..18401117, complement)

Chromosome 2 - NC_068557.1Genomic Context describing neighboring genes Neighboring gene protein RRP6-like 3 Neighboring gene probable protein S-acyltransferase 7 Neighboring gene uncharacterized LOC107175786 Neighboring gene microRNA MIR171a Neighboring gene autophagy-related protein 8C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2
Names
putative beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068557.1 Reference DVS_A1.0 Primary Assembly

    Range
    18963569..18967977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006469615.4 → XP_006469678.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_006469678.1

    UniProtKB/TrEMBL
    A0A067ELC6
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 407
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:16 → 113
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:152 → 350
    Galactosyl_T; Galactosyltransferase

  2. XM_006469616.4 → XP_006469679.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A067EUV8
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 405
    PLN03193; beta-1,3-galactosyltransferase; Provisional

  3. XM_006469617.4 → XP_006469680.1  probable beta-1,3-galactosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A067EU12
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 404
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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