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LOC102607855 hydroxyproline O-galactosyltransferase HPGT3 [ Citrus sinensis (sweet orange) ]

Gene ID: 102607855, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102607855
Gene description
hydroxyproline O-galactosyltransferase HPGT3
Locus tag
KPL70_000200
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102607855 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 1 NC_068556.1 (1553053..1557174, complement)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 7 NC_023052.1 (3119727..3123869)

Chromosome 1 - NC_068556.1Genomic Context describing neighboring genes Neighboring gene heparanase-like protein 3 Neighboring gene cysteine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT3
Names
probable beta-1,3-galactosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068556.1 Reference DVS_A1.0 Primary Assembly

    Range
    1553053..1557174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006483342.4 → XP_006483405.1  hydroxyproline O-galactosyltransferase HPGT3

    UniProtKB/TrEMBL
    A0A067FEC5
    Conserved Domains (2) summary
    pfam13334
    Location:23 → 101
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:135 → 329
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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