U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102606466 uncharacterized LOC102606466 [ Homo sapiens (human) ]

Gene ID: 102606466, updated on 10-Oct-2023

Summary

Gene symbol
LOC102606466
Gene description
uncharacterized LOC102606466
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.5) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
20p12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (12934877..12936963, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (12978289..12980375, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (12915525..12917611, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904871 Neighboring gene uncharacterized LOC105372532 Neighboring gene NANOG hESC enhancer GRCh37_chr20:12681309-12681810 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:12728856-12729533 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:12730880-12731401 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:12731402-12731922 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:12733099-12734064 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:12734065-12735030 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:12735031-12735995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:12736872-12737427 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:12739725-12740236 Neighboring gene long intergenic non-protein coding RNA 1722 Neighboring gene MPRA-validated peak4148 silencer Neighboring gene uncharacterized LOC105372535 Neighboring gene Sharpr-MPRA regulatory region 3567 Neighboring gene long intergenic non-protein coding RNA 1723 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:12980521-12980692 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:13010129-13011328 Neighboring gene serine palmitoyltransferase long chain base subunit 3 Neighboring gene CENATAC pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109872.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078623, HY012296

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    12934877..12936963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    12978289..12980375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)