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LINC01152 long intergenic non-protein coding RNA 1152 [ Homo sapiens (human) ]

Gene ID: 102606463, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01152provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1152provided by HGNC
Primary source
HGNC:HGNC:16752
See related
Ensembl:ENSG00000256124 AllianceGenome:HGNC:16752
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CMPD; TCONS_00025128
Expression
Biased expression in salivary gland (RPKM 1.5), testis (RPKM 0.9) and 5 other tissues See more
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Genomic context

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See LINC01152 in Genome Data Viewer
Location:
17q24.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (72030654..72041297)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (72903841..72914495)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (70026795..70037438)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985015 Neighboring gene SOX9 enhancer E3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:69867322-69868521 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:69896473-69897672 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12662 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8909 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12667 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:70025920-70026690 Neighboring gene uncharacterized LOC102723517 Neighboring gene regulator of chondrogenesis RNA Neighboring gene long intergenic non-protein coding RNA 2097 Neighboring gene SOX9 antisense RNA 1 Neighboring gene SOX9 enhancer E1 Neighboring gene SOX9 enhancer eALDI Neighboring gene TES enhancer upstream of SOX9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:70113837-70114458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:70115824-70116324 Neighboring gene SOX9 promoter region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:70119336-70119859 Neighboring gene SRY-box transcription factor 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Isolation of a testis-specific cDNA on chromosome 17q from a region adjacent to the breakpoint of t(12;17) observed in a patient with acampomelic campomelic dysplasia and sex reversal. Ninomiya S, et al. Hum Mol Genet, 1996 Jan. PMID 8789441
  2. The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. Barter MJ, et al. Development, 2017 Dec 15. PMID 29084806, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • RP11-84E24.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110124.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC007461
    Related
    ENST00000472655.4

  2. NR_110132.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC007461, DA197482

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    72030654..72041297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    72903841..72914495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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