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LOC102605547 laccase-12-like [ Solanum tuberosum (potato) ]

Gene ID: 102605547, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102605547
Gene description
laccase-12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102605547 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239128.1 (5587..8080, complement)

NW_006239128.1Genomic Context describing neighboring genes Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase IMK2 Neighboring gene laccase-12-like Neighboring gene uncharacterized LOC107062154

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239128.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239128.1 Reference SolTub_3.0 Primary Assembly

    Range
    5587..8080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006355573.2 → XP_006355635.1  laccase-12-like

    UniProtKB/TrEMBL
    M1CLA2
    Conserved Domains (4) summary
    cd13849
    Location:34 → 150
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:166 → 312
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:419 → 557
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:29 → 574
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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