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LOC102605260 patatin-05-like [ Solanum tuberosum (potato) ]

Gene ID: 102605260, updated on 18-Sep-2024

Summary

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Gene symbol
LOC102605260
Gene description
patatin-05-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
pat1; pat1-k1; Patatin-01; Patatin-02; Patatin-03; Patatin-05; Patatin-07; Patatin-13; Patatin-16
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Genomic context

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See LOC102605260 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239325.1 (486313..490832, complement)

NW_006239325.1Genomic Context describing neighboring genes Neighboring gene probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 Neighboring gene probable inactive patatin-3-Kuras 1 Neighboring gene patatin protein pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239325.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Direct immunological identification of full-length cDNA clones for plant protein without gene fusion to E. coli protein. Nakamura K, et al. FEBS Lett, 1986 Mar 17. PMID 2420638
  2. Covalent structures of potato tuber lipases (patatins) and implications for vacuolar import. Welinder KG, et al. J Biol Chem, 2009 Apr 10. PMID 19211558, Free PMC Article
  3. Patatins, Kunitz protease inhibitors and other major proteins in tuber of potato cv. Kuras. Bauw G, et al. FEBS J, 2006 Aug. PMID 16884497
  4. Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development. Stupar RM, et al. Genetics, 2006 Feb. PMID 16322504, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-05-like
Names
Patatin group A-1
Patatin group A-2
Patatin group A-3
Patatin-1-Kuras 1
StPat.14K07.03
class I patatin
patatin StPat.14K07.03
patatin group A
patatin group H
patatin group I
patatin group K
patatin group L
patatin group N
patatin group Q
patatin protein 01
patatin protein 02
patatin protein 03
patatin protein 05
patatin protein 07
patatin protein 13
patatin protein group A-1
patatin protein group A-2
patatin protein group A-3
patatin-like protein
NP_001275345.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288416.1 → NP_001275345.1  patatin-05-like precursor

    Status: PROVISIONAL

    Source sequence(s)
    DQ274500
    UniProtKB/Swiss-Prot
    Q2MY38, Q3YJT5
    Conserved Domains (1) summary
    cl11396
    Location:26 → 363
    Patatin_and_cPLA2; Patatins and Phospholipases

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239325.1 Reference SolTub_3.0 Primary Assembly

    Range
    486313..490832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Gene LinkOut

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