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LOC102600045 soluble starch synthase 1, chloroplastic/amyloplastic-like [ Solanum tuberosum (potato) ]

Gene ID: 102600045, updated on 18-Sep-2024

Summary

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Gene symbol
LOC102600045
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102600045 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239051.1 (411079..420079, complement)

NW_006239051.1Genomic Context describing neighboring genes Neighboring gene nucleoprotein TPR Neighboring gene probable VAMP-like protein At1g33475 Neighboring gene protein IQ-DOMAIN 1 Neighboring gene AP2/ERF and B3 domain-containing transcription factor At1g51120-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239051.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and functional analysis of a cDNA encoding a starch synthase from potato (Solanum tuberosum L.) that is predominantly expressed in leaf tissue. Kossmann J, et al. Planta, 1999 Jun. PMID 10420646

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic
Names
SS I
Soluble starch synthase 1, chloroplastic/amyloplastic
Soluble starch synthase I
soluble starch (bacterial glycogen) synthase
NP_001275074.1
XP_006350536.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288145.1 → NP_001275074.1  soluble starch synthase 1, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for NP_001275074.1

    Status: PROVISIONAL

    Source sequence(s)
    Y10416
    UniProtKB/Swiss-Prot
    P93568
    UniProtKB/TrEMBL
    M1BLC2
    Conserved Domains (1) summary
    cd03791
    Location:132 → 632
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239051.1 Reference SolTub_3.0 Primary Assembly

    Range
    411079..420079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006350474.2 → XP_006350536.1  soluble starch synthase 1, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    M1BLC2, M1BLC3
    Conserved Domains (1) summary
    cd03791
    Location:132 → 632
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93568.1 GenPept UniProtKB/Swiss-Prot:P93568

Gene LinkOut

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