U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102593198 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Solanum tuberosum (potato) ]

Gene ID: 102593198, updated on 2-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC102593198
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102593198 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006238947.1 (1238587..1254113, complement)

NW_006238947.1Genomic Context describing neighboring genes Neighboring gene casparian strip membrane protein 1-like Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-2 Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene NAC domain-containing protein 90-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006238947.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006238947.1 Reference SolTub_3.0 Primary Assembly

    Range
    1238587..1254113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006341017.2 → XP_006341079.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    See identical proteins and their annotated locations for XP_006341079.1

    UniProtKB/TrEMBL
    M1AHR2
    Conserved Domains (5) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:402 → 434
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:81 → 147
    TPR_11; TPR repeat
    cl10013
    Location:488 → 846
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  2. XM_006341018.2 → XP_006341080.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    See identical proteins and their annotated locations for XP_006341080.1

    UniProtKB/TrEMBL
    M1AHR2
    Conserved Domains (5) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:402 → 434
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:81 → 147
    TPR_11; TPR repeat
    cl10013
    Location:488 → 846
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases