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TK transketolase [ Solanum tuberosum (potato) ]

Gene ID: 102591899, updated on 2-Nov-2023

Summary

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Gene symbol
TK
Gene description
transketolase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239830.1 (2462..5765, complement)

NW_006239830.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239830.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transketolase, chloroplastic
Names
Transketolase, chloroplastic
NP_001275202.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288273.1 → NP_001275202.1  transketolase, chloroplastic

    See identical proteins and their annotated locations for NP_001275202.1

    Status: PROVISIONAL

    Source sequence(s)
    Z50099
    UniProtKB/Swiss-Prot
    Q43848
    UniProtKB/TrEMBL
    M1BZW7
    Conserved Domains (4) summary
    cd07033
    Location:435 → 598
    TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
    PLN02790
    Location:88 → 741
    PLN02790; transketolase
    pfam00456
    Location:83 → 414
    Transketolase_N; Transketolase, thiamine diphosphate binding domain
    pfam02780
    Location:628 → 733
    Transketolase_C; Transketolase, C-terminal domain

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239830.1 Reference SolTub_3.0 Primary Assembly

    Range
    2462..5765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43848.1 GenPept UniProtKB/Swiss-Prot:Q43848

Gene LinkOut

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Molecular Biology Databases