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LOC102591463 cellulose synthase A catalytic subunit 5 [UDP-forming] [ Solanum tuberosum (potato) ]

Gene ID: 102591463, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102591463
Gene description
cellulose synthase A catalytic subunit 5 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102591463 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239054.1 (1125514..1133341, complement)

NW_006239054.1Genomic Context describing neighboring genes Neighboring gene ribosomal RNA small subunit methyltransferase H Neighboring gene uncharacterized LOC102591135 Neighboring gene WD repeat domain-containing protein 83 Neighboring gene DNA-directed RNA polymerase II subunit 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239054.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 5 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239054.1 Reference SolTub_3.0 Primary Assembly

    Range
    1125514..1133341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006350939.2 → XP_006351001.1  cellulose synthase A catalytic subunit 5 [UDP-forming]

    UniProtKB/TrEMBL
    M0ZXJ4, M0ZXJ5
    Conserved Domains (3) summary
    PLN02436
    Location:4 → 1089
    PLN02436; cellulose synthase A
    pfam14569
    Location:37 → 99
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:531 → 840
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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