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LOC102590435 probable beta-1,3-galactosyltransferase 3 [ Solanum tuberosum (potato) ]

Gene ID: 102590435, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102590435
Gene description
probable beta-1,3-galactosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102590435 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239064.1 (549060..553230)

NW_006239064.1Genomic Context describing neighboring genes Neighboring gene aconitate hydratase, cytoplasmic Neighboring gene NEDD8-activating enzyme E1 regulatory subunit-like Neighboring gene uncharacterized LOC107061457 Neighboring gene transcription factor MYB51-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239064.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2; probable beta-1,3-galactosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239064.1 Reference SolTub_3.0 Primary Assembly

    Range
    549060..553230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006351905.2 → XP_006351967.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    M1AGV9
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 395
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam01762
    Location:143 → 338
    Galactosyl_T; Galactosyltransferase
    pfam13334
    Location:18 → 104
    DUF4094; Domain of unknown function (DUF4094)

  2. XM_006351904.2 → XP_006351966.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    M1AGW0
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 397
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam01762
    Location:145 → 340
    Galactosyl_T; Galactosyltransferase
    pfam13334
    Location:18 → 106
    DUF4094; Domain of unknown function (DUF4094)

  3. XM_015310725.1 → XP_015166211.1  probable beta-1,3-galactosyltransferase 3 isoform X3

    Conserved Domains (3) summary
    PLN03193
    Location:1 → 358
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam01762
    Location:106 → 301
    Galactosyl_T; Galactosyltransferase
    pfam13334
    Location:1 → 67
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein
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