U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102583165 L-ascorbate oxidase-like [ Solanum tuberosum (potato) ]

Gene ID: 102583165, updated on 2-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC102583165
Gene description
L-ascorbate oxidase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102583165 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239336.1 (424786..432405, complement)

NW_006239336.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting serine/threonine-protein kinase 3-like Neighboring gene COP9 signalosome complex subunit 2-like Neighboring gene signal peptide peptidase Neighboring gene uncharacterized LOC107057964

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006239336.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasmodesma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
L-ascorbate oxidase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239336.1 Reference SolTub_3.0 Primary Assembly

    Range
    424786..432405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006362703.2 → XP_006362765.1  L-ascorbate oxidase-like

    UniProtKB/TrEMBL
    M1C2R3, M1C2R4
    Conserved Domains (3) summary
    cd13893
    Location:362 → 551
    CuRO_3_AAO; The third cupredoxin domain of plant Ascorbate oxidase
    TIGR03388
    Location:23 → 560
    ascorbase; L-ascorbate oxidase, plant type
    cl19115
    Location:150 → 315
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases