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LOC102583088 beta-glucosidase BoGH3B-like [ Solanum tuberosum (potato) ]

Gene ID: 102583088, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102583088
Gene description
beta-glucosidase BoGH3B-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102583088 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239043.1 (861989..869975, complement)

NW_006239043.1Genomic Context describing neighboring genes Neighboring gene protein EFR3 homolog B Neighboring gene zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like Neighboring gene uncharacterized LOC102583415 Neighboring gene polygalacturonase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239043.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase BoGH3B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239043.1 Reference SolTub_3.0 Primary Assembly

    Range
    861989..869975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006350146.2 → XP_006350208.1  beta-glucosidase BoGH3B-like

    UniProtKB/TrEMBL
    M1CLM2, M1CLM3
    Conserved Domains (3) summary
    COG1472
    Location:51 → 484
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:417 → 625
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:53 → 380
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
Heading Accession and Version

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