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ACADSB acyl-CoA dehydrogenase short/branched chain [ Alligator mississippiensis (American alligator) ]

Gene ID: 102577069, updated on 8-May-2024

Summary

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Gene symbol
ACADSB
Gene description
acyl-CoA dehydrogenase short/branched chain
Locus tag
Y1Q_0012838
See related
EnsemblRapid:ENSAMIG00015013870
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ACADSB in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 6 NC_081829.1 (84302791..84349423, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708463.1 (327147..372564)

Chromosome 6 - NC_081829.1Genomic Context describing neighboring genes Neighboring gene H6 family homeobox 2 Neighboring gene H6 family homeobox 3 Neighboring gene IKAROS family zinc finger 5 Neighboring gene phosphoseryl-tRNA kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short/branched chain specific acyl-CoA dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081829.1 Reference rAllMis1 Primary Assembly

    Range
    84302791..84349423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014600940.3 → XP_014456426.1  short/branched chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A151P470
    Related
    ENSAMIP00015018129.1, ENSAMIT00015025949.1
    Conserved Domains (2) summary
    cd01158
    Location:54 → 424
    SCAD_SBCAD; Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
    COG1960
    Location:52 → 421
    CaiA; Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]

  2. XM_019482844.2 → XP_019338389.1  short/branched chain specific acyl-CoA dehydrogenase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A151P470
    Related
    ENSAMIP00015018133.1, ENSAMIT00015025953.1

  3. XM_059730053.1 → XP_059586036.1  short/branched chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1

  4. XM_059730054.1 → XP_059586037.1  short/branched chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1

Nucleotide Protein
Heading Accession and Version

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