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POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576929, updated on 8-May-2024

Summary

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Gene symbol
POMGNT1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
Locus tag
Y1Q_0003575
See related
EnsemblRapid:ENSAMIG00015018959
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See POMGNT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 5 NC_081828.1 (3355092..3374480, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710495.1 (65210..84677, complement)

Chromosome 5 - NC_081828.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase regulatory subunit 3 Neighboring gene tetraspanin 1 Neighboring gene leucine rich adaptor protein 1 Neighboring gene RAD54 like Neighboring gene leucine rich repeat containing 41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081828.1 Reference rAllMis1 Primary Assembly

    Range
    3355092..3374480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019490050.2 → XP_019345595.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

    Related
    ENSAMIP00015025694.1, ENSAMIT00015035961.1

  2. XM_014606993.3 → XP_014462479.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A151NGF9
    Related
    ENSAMIP00015025673.1, ENSAMIT00015035929.1
    Conserved Domains (2) summary
    cd02514
    Location:298 → 625
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:96 → 243
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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