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B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576374, updated on 8-May-2024

Summary

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Gene symbol
B4GALNT1
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 1
Locus tag
Y1Q_0007659
See related
EnsemblRapid:ENSAMIG00015005017
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See B4GALNT1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 15 NC_081838.1 (7422514..7430109, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711508.1 (2493..8403, complement)

Chromosome 15 - NC_081838.1Genomic Context describing neighboring genes Neighboring gene deltex E3 ubiquitin ligase 3 Neighboring gene Rho guanine nucleotide exchange factor 25 Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081838.1 Reference rAllMis1 Primary Assembly

    Range
    7422514..7430109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014608584.3 → XP_014464070.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A151N3A4
    Related
    ENSAMIP00015005984.1, ENSAMIT00015008951.1
    Conserved Domains (1) summary
    pfam00535
    Location:291 → 436
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_059719290.1 → XP_059575273.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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