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PLCD1 phospholipase C delta 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576343, updated on 8-May-2024

Summary

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Gene symbol
PLCD1
Gene description
phospholipase C delta 1
Locus tag
Y1Q_0014553
See related
EnsemblRapid:ENSAMIG00015010046
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PLCD1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 5 NC_081828.1 (210311228..210384875)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707901.1 (27153500..27227195)

Chromosome 5 - NC_081828.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132250955 Neighboring gene acetyl-CoA acyltransferase 1 Neighboring gene DLEC1 cilia and flagella associated protein Neighboring gene villin like Neighboring gene CTD small phosphatase like Neighboring gene uncharacterized LOC132250956

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081828.1 Reference rAllMis1 Primary Assembly

    Range
    210311228..210384875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014609049.3 → XP_014464535.2  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X2

    Related
    ENSAMIP00015012496.1, ENSAMIT00015018241.1

  2. XM_014609048.3 → XP_014464534.2  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X1

    Related
    ENSAMIP00015012492.1, ENSAMIT00015018237.1
Nucleotide Protein
Heading Accession and Version

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