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SLC35C1 solute carrier family 35 member C1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576254, updated on 8-May-2024

Summary

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Gene symbol
SLC35C1
Gene description
solute carrier family 35 member C1
Locus tag
Y1Q_0000481
See related
EnsemblRapid:ENSAMIG00015004438
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SLC35C1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (226430266..226436671)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713697.1 (8648266..8654125, complement)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 263 Neighboring gene uncharacterized LOC132248749 Neighboring gene carbohydrate sulfotransferase 1 Neighboring gene cryptochrome circadian regulator 2 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-fucose import into Golgi lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    226430266..226436671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019477143.2 → XP_019332688.1  GDP-fucose transporter 1 isoform X2

    Related
    ENSAMIP00015005464.1, ENSAMIT00015008020.1

  2. XM_006274062.4 → XP_006274124.1  GDP-fucose transporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A151MB83
    Conserved Domains (2) summary
    TIGR00817
    Location:51 → 347
    tpt; Tpt phosphate/phosphoenolpyruvate translocator
    cl23754
    Location:200 → 342
    EamA; EamA-like transporter family
Nucleotide Protein
Heading Accession and Version

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