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SCD5 stearoyl-CoA desaturase 5 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102574144, updated on 8-May-2024

Summary

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Gene symbol
SCD5
Gene description
stearoyl-CoA desaturase 5
Locus tag
Y1Q_0022380
See related
EnsemblRapid:ENSAMIG00015015568
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SCD5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (146287126..146367999, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708772.1 (773179..844886, complement)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein D like Neighboring gene transmembrane protein 150C Neighboring gene enolase-phosphatase 1 Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene THAP domain containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stearoyl-CoA desaturase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    146287126..146367999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006271162.4 → XP_006271224.1  stearoyl-CoA desaturase 5 isoform X1

    UniProtKB/TrEMBL
    A0A151P120
    Related
    ENSAMIP00015020485.1, ENSAMIT00015029258.1
    Conserved Domains (2) summary
    cd03505
    Location:72 → 309
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
    pfam00487
    Location:75 → 277
    FA_desaturase; Fatty acid desaturase

  2. XM_019483929.2 → XP_019339474.1  stearoyl-CoA desaturase 5 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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