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LDHB lactate dehydrogenase B [ Alligator mississippiensis (American alligator) ]

Gene ID: 102573484, updated on 8-May-2024

Summary

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Gene symbol
LDHB
Gene description
lactate dehydrogenase B
Locus tag
Y1Q_0024387
See related
EnsemblRapid:ENSAMIG00015009637
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
LDH-B
Orthologs
human mouse all
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Genomic context

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See LDHB in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (127544450..127557681)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710370.1 (30342907..30356138)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily C member 9 Neighboring gene potassium inwardly rectifying channel subfamily J member 8 Neighboring gene glycogen synthase 2 Neighboring gene inositol 1,4,5-triphosphate receptor associated 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The cDNA cloning and molecular evolution of reptile and pigeon lactate dehydrogenase isozymes. Mannen H, et al. Mol Biol Evol, 1997 Nov. PMID 9364765
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-lactate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-lactate dehydrogenase B chain
NP_001274216.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287287.1 → NP_001274216.1  L-lactate dehydrogenase B chain

    See identical proteins and their annotated locations for NP_001274216.1

    Status: PROVISIONAL

    Source sequence(s)
    L79952
    UniProtKB/Swiss-Prot
    Q9PW05
    UniProtKB/TrEMBL
    A0A151NJM8
    Related
    ENSAMIP00015011939.1, ENSAMIT00015017428.1
    Conserved Domains (2) summary
    cd05293
    Location:33 → 329
    LDH_1; A subgroup of L-lactate dehydrogenases
    TIGR01771
    Location:33 → 325
    L-LDH-NAD; L-lactate dehydrogenase

RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    127544450..127557681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9PW05.3 GenPept UniProtKB/Swiss-Prot:Q9PW05

Gene LinkOut

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