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IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha [ Alligator mississippiensis (American alligator) ]

Gene ID: 102572950, updated on 8-May-2024

Summary

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Gene symbol
IDH3A
Gene description
isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha
Locus tag
Y1Q_0001574
See related
EnsemblRapid:ENSAMIG00015009077
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See IDH3A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 11 NC_081834.1 (31076697..31099035, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713709.1 (28252158..28269348, complement)

Chromosome 11 - NC_081834.1Genomic Context describing neighboring genes Neighboring gene SKI8 subunit of superkiller complex Neighboring gene DnaJ heat shock protein family (Hsp40) member A4 Neighboring gene acyl-CoA synthetase bubblegum family member 1 Neighboring gene uncharacterized LOC109280685 Neighboring gene calcium and integrin binding family member 2 Neighboring gene SH2 domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial
Names
isocitrate dehydrogenase (NAD(+)) 3 alpha
isocitrate dehydrogenase 3 (NAD(+)) alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081834.1 Reference rAllMis1 Primary Assembly

    Range
    31076697..31099035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006267596.4 → XP_006267658.1  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial

    UniProtKB/TrEMBL
    A0A151MA05
    Related
    ENSAMIP00015011034.1, ENSAMIT00015016291.1
    Conserved Domains (1) summary
    TIGR00175
    Location:31 → 362
    mito_nad_idh; isocitrate dehydrogenase, NAD-dependent, mitochondrial type
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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