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MMADHC metabolism of cobalamin associated D [ Alligator mississippiensis (American alligator) ]

Gene ID: 102572754, updated on 8-May-2024

Summary

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Gene symbol
MMADHC
Gene description
metabolism of cobalamin associated D
Locus tag
Y1Q_0011627
See related
EnsemblRapid:ENSAMIG00015015208
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See MMADHC in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (228277506..228294456)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714267.1 (24892719..24910189)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109281366 Neighboring gene Rho family GTPase 3 Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene LY6/PLAUR domain containing 6B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cobalamin trafficking protein CblD
Names
methylmalonic aciduria and homocystinuria type D protein, mitochondrial
methylmalonic aciduria and homocystinuria, cblD type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    228277506..228294456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006278813.4 → XP_006278875.1  cobalamin trafficking protein CblD

    UniProtKB/TrEMBL
    A0A151M0I4
    Related
    ENSAMIP00015020164.1, ENSAMIT00015028569.1
    Conserved Domains (1) summary
    pfam10229
    Location:24 → 293
    DUF2246; Uncharacterized conserved protein (DUF2246)
Nucleotide Protein
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Gene LinkOut

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