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AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102572616, updated on 8-May-2024

Summary

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Gene symbol
AGPAT5
Gene description
1-acylglycerol-3-phosphate O-acyltransferase 5
See related
EnsemblRapid:ENSAMIG00015007448
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See AGPAT5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (47648925..47754651)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710037.1 (6536169..6639973)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132249954 Neighboring gene uncharacterized LOC109283423 Neighboring gene microcephalin 1 Neighboring gene U4 spliceosomal RNA Neighboring gene angiopoietin 2 Neighboring gene glutathione S-transferase Neighboring gene transmembrane protein 14A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    47648925..47754651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006262403.4 → XP_006262465.2  1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon isoform X1

    Related
    ENSAMIP00015009369.1, ENSAMIT00015013563.1

  2. XM_019488433.2 → XP_019343978.2  1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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