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DGKD diacylglycerol kinase delta [ Alligator mississippiensis (American alligator) ]

Gene ID: 102571855, updated on 18-Sep-2024

Summary

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Gene symbol
DGKD
Gene description
diacylglycerol kinase delta
See related
EnsemblRapid:ENSAMIG00015015950
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See DGKD in Genome Data Viewer
Location:
chromosome: 7
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 7 NC_081830.1 (39040072..39121638)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709344.1 (1228928..1307725)

Chromosome 7 - NC_081830.1Genomic Context describing neighboring genes Neighboring gene autophagy related 16 like 1 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene vitamin K-dependent protein C Neighboring gene coagulation factor VII

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent diacylglycerol kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in diacylglycerol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
diacylglycerol kinase delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081830.1 Reference rAllMis1 Primary Assembly

    Range
    39040072..39121638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059730882.1 → XP_059586865.1  diacylglycerol kinase delta isoform X5

  2. XM_014598979.3 → XP_014454465.2  diacylglycerol kinase delta isoform X1

    Related
    ENSAMIP00015021134.1, ENSAMIT00015030043.1

  3. XM_019486105.2 → XP_019341650.1  diacylglycerol kinase delta isoform X2

  4. XM_059730881.1 → XP_059586864.1  diacylglycerol kinase delta isoform X3

  5. XM_014598983.3 → XP_014454469.1  diacylglycerol kinase delta isoform X4

    Related
    ENSAMIP00015021131.1, ENSAMIT00015030040.1
    Conserved Domains (6) summary
    cd09575
    Location:1012 → 1076
    SAM_DGK-delta; SAM domain of diacylglycerol kinase delta
    smart00454
    Location:1013 → 1076
    SAM; Sterile alpha motif
    smart00045
    Location:634 → 791
    DAGKa; Diacylglycerol kinase accessory domain (presumed)
    smart00046
    Location:190 → 312
    DAGKc; Diacylglycerol kinase catalytic domain (presumed)
    cd00029
    Location:31 → 80
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cl17171
    Location:1 → 18
    PH-like; Pleckstrin homology-like domain

RNA

  1. XR_009463431.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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