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CPT1B carnitine palmitoyltransferase 1B [ Alligator mississippiensis (American alligator) ]

Gene ID: 102571274, updated on 8-May-2024

Summary

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Gene symbol
CPT1B
Gene description
carnitine palmitoyltransferase 1B
Locus tag
Y1Q_0002522
See related
EnsemblRapid:ENSAMIG00015022634
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
CPT1A
Orthologs
human mouse all
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Genomic context

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See CPT1B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (208088..224583, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714017.1 (48512..58135, complement)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 883 Neighboring gene uncharacterized LOC132249835 Neighboring gene C-type lectin lectoxin-Thr1 Neighboring gene kelch-like protein 42 Neighboring gene choline kinase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, muscle isoform
Names
carnitine palmitoyltransferase 1B (muscle)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    208088..224583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059725571.1 → XP_059581554.1  carnitine O-palmitoyltransferase 1, muscle isoform isoform X4

    Related
    ENSAMIP00015031253.1, ENSAMIT00015042997.1

  2. XM_059725569.1 → XP_059581552.1  carnitine O-palmitoyltransferase 1, muscle isoform isoform X2

    Related
    ENSAMIP00015031246.1, ENSAMIT00015042990.1

  3. XM_059725570.1 → XP_059581553.1  carnitine O-palmitoyltransferase 1, muscle isoform isoform X3

  4. XM_059725566.1 → XP_059581549.1  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1

  5. XM_059725567.1 → XP_059581550.1  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1

  6. XM_059725568.1 → XP_059581551.1  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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