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CPT2 carnitine palmitoyltransferase 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102569677, updated on 8-May-2024

Summary

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Gene symbol
CPT2
Gene description
carnitine palmitoyltransferase 2
Locus tag
Y1Q_0003514
See related
EnsemblRapid:ENSAMIG00015018536
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
SPATA9
Orthologs
human mouse all
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Genomic context

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See CPT2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 5 NC_081828.1 (9654574..9663050)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714045.1 (5731113..5742296)

Chromosome 5 - NC_081828.1Genomic Context describing neighboring genes Neighboring gene podocan Neighboring gene solute carrier family 1 member 7 Neighboring gene CXXC motif containing zinc binding protein Neighboring gene mago homolog, exon junction complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 2, mitochondrial
Names
spermatogenesis-associated protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081828.1 Reference rAllMis1 Primary Assembly

    Range
    9654574..9663050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006259613.4 → XP_006259675.3  carnitine O-palmitoyltransferase 2, mitochondrial isoform X1

    Related
    ENSAMIP00015025018.1, ENSAMIT00015035033.1

  2. XM_059727838.1 → XP_059583821.1  carnitine O-palmitoyltransferase 2, mitochondrial isoform X2

  3. XM_059727839.1 → XP_059583822.1  carnitine O-palmitoyltransferase 2, mitochondrial isoform X3

Nucleotide Protein
Heading Accession and Version

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