U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHKA choline kinase alpha [ Alligator mississippiensis (American alligator) ]

Gene ID: 102568832, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
CHKA
Gene description
choline kinase alpha
Locus tag
Y1Q_0006331
See related
EnsemblRapid:ENSAMIG00015023600
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHKA in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (182133249..182168714)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709042.1 (25482594..25516132, complement)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene lysine methyltransferase 5B Neighboring gene uncharacterized LOC132248673 Neighboring gene uncharacterized LOC132248674 Neighboring gene ribonuclease inhibitor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    182133249..182168714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059722529.1 → XP_059578512.1  choline kinase alpha isoform X1

    Related
    ENSAMIP00015032325.1, ENSAMIT00015044741.1

  2. XM_006261235.4 → XP_006261297.2  choline kinase alpha isoform X2

    Related
    ENSAMIP00015032334.1, ENSAMIT00015044751.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.