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BEND6 BEN domain containing 6 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102567704, updated on 8-May-2024

Summary

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Gene symbol
BEND6
Gene description
BEN domain containing 6
Locus tag
Y1Q_0014030
See related
EnsemblRapid:ENSAMIG00015014135
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
BEND6-1
Orthologs
human mouse all
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Genomic context

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See BEND6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (51250928..51297914)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707897.1 (11601333..11699991, complement)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(IX) chain Neighboring gene uncharacterized LOC132251387 Neighboring gene dystonin Neighboring gene uncharacterized LOC132251384 Neighboring gene zinc finger protein 451 Neighboring gene BAG cochaperone 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    51250928..51297914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019496969.2 → XP_019352514.1  BEN domain-containing protein 6 isoform X1

  2. XM_019496962.2 → XP_019352507.1  BEN domain-containing protein 6 isoform X1

  3. XM_059730638.1 → XP_059586621.1  BEN domain-containing protein 6 isoform X2

  4. XM_059730642.1 → XP_059586625.1  BEN domain-containing protein 6 isoform X3

    Related
    ENSAMIP00015018489.1, ENSAMIT00015026477.1

RNA

  1. XR_009463361.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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