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PLB1 phospholipase B1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102566737, updated on 10-Mar-2024

Summary

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Gene symbol
PLB1
Gene description
phospholipase B1
Locus tag
Y1Q_0013522
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PLB1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (175947339..176044311)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708560.1 (6078115..6228702)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene BRISC and BRCA1 A complex member 2 Neighboring gene uncharacterized LOC106738981 Neighboring gene FOS like 2, AP-1 transcription factor subunit Neighboring gene uncharacterized LOC132250037 Neighboring gene protein phosphatase 1 catalytic subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in brush border membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase B1, membrane-associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    175947339..176044311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014597985.3 → XP_014453471.2  phospholipase B1, membrane-associated

Nucleotide Protein
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