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CHST12 carbohydrate sulfotransferase 12 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102565939, updated on 8-May-2024

Summary

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Gene symbol
CHST12
Gene description
carbohydrate sulfotransferase 12
Locus tag
Y1Q_0008323
See related
EnsemblRapid:ENSAMIG00015017672
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See CHST12 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 13 NC_081836.1 (51232953..51245037)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711568.1 (16173125..16185067)

Chromosome 13 - NC_081836.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene kinesin-like protein KIF19 Neighboring gene galanin receptor type 1 Neighboring gene galectin-related inter-fiber protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081836.1 Reference rAllMis1 Primary Assembly

    Range
    51232953..51245037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059716205.1 → XP_059572188.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A151N1S7
    Related
    ENSAMIP00015023823.1, ENSAMIT00015033458.1

  2. XM_059716206.1 → XP_059572189.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A151N1S7

  3. XM_019494823.2 → XP_019350368.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A151N1S7
    Related
    ENSAMIP00015023824.1, ENSAMIT00015033460.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  4. XM_006276743.4 → XP_006276805.2  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A151N1S7
    Related
    ENSAMIP00015023821.1, ENSAMIT00015033455.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  5. XM_019494826.2 → XP_019350371.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A151N1S7
    Related
    ENSAMIP00015023816.1, ENSAMIT00015033449.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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