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SGCA sarcoglycan alpha [ Alligator mississippiensis (American alligator) ]

Gene ID: 102565868, updated on 8-May-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
Locus tag
Y1Q_0012138
See related
EnsemblRapid:ENSAMIG00015022071
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (169699989..169727268)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708231.1 (4910726..4937957)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 14 Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene uncharacterized LOC132250352 Neighboring gene collagen type I alpha 1 chain Neighboring gene alpha-2-macroglobulin-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    169699989..169727268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019482627.2 → XP_019338172.1  alpha-sarcoglycan isoform X2

    Related
    ENSAMIP00015030433.1, ENSAMIT00015041871.1

  2. XM_014603578.3 → XP_014459064.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A151P614
    Related
    ENSAMIP00015030438.1, ENSAMIT00015041876.1
    Conserved Domains (1) summary
    pfam05510
    Location:10 → 355
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
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Gene LinkOut

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