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PIGF phosphatidylinositol glycan anchor biosynthesis class F [ Alligator mississippiensis (American alligator) ]

Gene ID: 102565071, updated on 8-May-2024

Summary

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Gene symbol
PIGF
Gene description
phosphatidylinositol glycan anchor biosynthesis class F
Locus tag
Y1Q_0011068
See related
EnsemblRapid:ENSAMIG00015023171
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PIGF in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (199172957..199221424, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709071.1 (2690759..2737035)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 247 Neighboring gene uncharacterized LOC109282660 Neighboring gene ras homolog family member Q Neighboring gene GTP cyclohydrolase 1 Neighboring gene CXXC repeat containing interactor of PDZ3 domain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-glycan biosynthesis class F protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    199172957..199221424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006272176.4 → XP_006272238.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X1

    Related
    ENSAMIP00015031819.1, ENSAMIT00015043945.1
    Conserved Domains (1) summary
    pfam06699
    Location:21 → 204
    PIG-F; GPI biosynthesis protein family Pig-F

  2. XM_019485351.2 → XP_019340896.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X2

  3. XM_019485352.2 → XP_019340897.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X3

    Conserved Domains (1) summary
    pfam06699
    Location:21 → 182
    PIG-F; GPI biosynthesis protein family Pig-F
Nucleotide Protein
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