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CTSA cathepsin A [ Alligator mississippiensis (American alligator) ]

Gene ID: 102564952, updated on 10-Mar-2024

Summary

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Gene symbol
CTSA
Gene description
cathepsin A
Locus tag
Y1Q_0005975
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
ZSWIM1
Orthologs
human mouse all
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Genomic context

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See CTSA in Genome Data Viewer
Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 9 NC_081832.1 (598041..605207, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708821.1 (17341..21664)

Chromosome 9 - NC_081832.1Genomic Context describing neighboring genes Neighboring gene phosphorylated CTD interacting factor 1 Neighboring gene phospholipid transfer protein Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene zinc finger SWIM-type containing 1 Neighboring gene zinc finger SWIM-type containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal protective protein
Names
zinc finger, SWIM-type containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081832.1 Reference rAllMis1 Primary Assembly

    Range
    598041..605207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059713093.1 → XP_059569076.1  lysosomal protective protein

Nucleotide Protein
Heading Accession and Version

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