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B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102563895, updated on 8-May-2024

Summary

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Gene symbol
B4GALNT3
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 3
Locus tag
Y1Q_0024294
See related
EnsemblRapid:ENSAMIG00015013948
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See B4GALNT3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (115872997..115999722)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710370.1 (19260793..19379704)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5A Neighboring gene uncharacterized LOC109283640 Neighboring gene coiled-coil domain containing 77 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene ninjurin 2 Neighboring gene WNK lysine deficient protein kinase 1 Neighboring gene uncharacterized LOC106740227

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    115872997..115999722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019489554.2 → XP_019345099.1  beta-1,4-N-acetylgalactosaminyltransferase 3

    UniProtKB/TrEMBL
    A0A151NIF4
    Related
    ENSAMIP00015018547.1, ENSAMIT00015026549.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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