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ACER1 alkaline ceramidase 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102560929, updated on 8-May-2024

Summary

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Gene symbol
ACER1
Gene description
alkaline ceramidase 1
Locus tag
Y1Q_0011880
See related
EnsemblRapid:ENSAMIG00015000804
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ACER1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 16 NC_081839.1 (6212221..6237332, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709079.1 (359689..384347)

Chromosome 16 - NC_081839.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase bubblegum family member 2 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B Neighboring gene zinc finger protein 414

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081839.1 Reference rAllMis1 Primary Assembly

    Range
    6212221..6237332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006266813.4 → XP_006266875.1  alkaline ceramidase 1

    UniProtKB/TrEMBL
    A0A151NWB4
    Related
    ENSAMIP00015000562.1, ENSAMIT00015001118.1
    Conserved Domains (1) summary
    pfam05875
    Location:3 → 254
    Ceramidase; Ceramidase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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