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LOC102560898 heparan-sulfate 6-O-sulfotransferase 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102560898, updated on 23-Oct-2023

Summary

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Gene symbol
LOC102560898
Gene description
heparan-sulfate 6-O-sulfotransferase 2
Locus tag
Y1Q_0021093
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
HS6ST3
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Genomic context

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See LOC102560898 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (367076598..367367426, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709609.1 (6300765..6885757, complement)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate receptor 1 Neighboring gene uncharacterized LOC132247783 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member C3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2
Names
heparan sulfate 6-O-sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    367076598..367367426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059721116.1 → XP_059577099.1  heparan-sulfate 6-O-sulfotransferase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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