U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DAG1 dystroglycan 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102560402, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
DAG1
Gene description
dystroglycan 1
Locus tag
Y1Q_0013019
See related
EnsemblRapid:ENSAMIG00015010236
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DAG1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 12 NC_081835.1 (41083017..41207972, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017712492.1 (997732..1116859, complement)

Chromosome 12 - NC_081835.1Genomic Context describing neighboring genes Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene aminomethyltransferase Neighboring gene macrophage stimulating 1 Neighboring gene acylaminoacyl-peptide hydrolase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle attachment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nerve development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of dystroglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dystroglycan 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081835.1 Reference rAllMis1 Primary Assembly

    Range
    41083017..41207972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014597974.3 → XP_014453460.1  dystroglycan 1

    Conserved Domains (3) summary
    cd11303
    Location:60 → 161
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:179 → 302
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    pfam05454
    Location:605 → 894
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)

  2. XM_019497009.2 → XP_019352554.1  dystroglycan 1

    Related
    ENSAMIP00015012881.1, ENSAMIT00015018675.1

  3. XM_019497010.2 → XP_019352555.1  dystroglycan 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.