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B3GALT5 beta-1,3-galactosyltransferase 5 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102559538, updated on 8-May-2024

Summary

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Gene symbol
B3GALT5
Gene description
beta-1,3-galactosyltransferase 5
Locus tag
Y1Q_0003322
See related
EnsemblRapid:ENSAMIG00015016593
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See B3GALT5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (296803979..296839831)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713645.1 (53371438..53399894)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene lebercilin LCA5 like Neighboring gene uncharacterized LOC109280354 Neighboring gene SH3 domain binding glutamate rich protein Neighboring gene immunoglobulin superfamily member 5 Neighboring gene Purkinje cell protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    296803979..296839831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014599192.3 → XP_014454678.1  beta-1,3-galactosyltransferase 5

    Related
    ENSAMIP00015022225.1, ENSAMIT00015031325.1
    Conserved Domains (1) summary
    cl21608
    Location:87 → 276
    Galactosyl_T; Galactosyltransferase

  2. XM_019475999.2 → XP_019331544.1  beta-1,3-galactosyltransferase 5

  3. XM_059720749.1 → XP_059576732.1  beta-1,3-galactosyltransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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