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IGSF5 immunoglobulin superfamily member 5 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102559310, updated on 8-May-2024

Summary

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Gene symbol
IGSF5
Gene description
immunoglobulin superfamily member 5
Locus tag
Y1Q_0003323
See related
EnsemblRapid:ENSAMIG00015016636
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
IGSF5-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (296858651..296957718)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713645.1 (53425222..53495771)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109280354 Neighboring gene SH3 domain binding glutamate rich protein Neighboring gene beta-1,3-galactosyltransferase 5 Neighboring gene Purkinje cell protein 4 Neighboring gene DS cell adhesion molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin superfamily member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    296858651..296957718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006262504.4 → XP_006262566.2  immunoglobulin superfamily member 5 isoform X1

    Related
    ENSAMIP00015022296.1, ENSAMIT00015031435.1
    Conserved Domains (2) summary
    smart00410
    Location:31 → 127
    IG_like; Immunoglobulin like
    cl11960
    Location:131 → 220
    Ig; Immunoglobulin domain

  2. XM_019476507.2 → XP_019332052.1  immunoglobulin superfamily member 5 isoform X2

    Conserved Domains (2) summary
    smart00410
    Location:31 → 125
    IG_like; Immunoglobulin like
    cl27169
    Location:288 → 385
    ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

  3. XM_019476508.2 → XP_019332053.1  immunoglobulin superfamily member 5 isoform X4

  4. XM_014599161.3 → XP_014454647.1  immunoglobulin superfamily member 5 isoform X3

    Related
    ENSAMIP00015022306.1, ENSAMIT00015031445.1
    Conserved Domains (2) summary
    smart00410
    Location:31 → 127
    IG_like; Immunoglobulin like
    cl11960
    Location:131 → 220
    Ig; Immunoglobulin domain

RNA

  1. XR_002086723.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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