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PIGN phosphatidylinositol glycan anchor biosynthesis class N [ Alligator mississippiensis (American alligator) ]

Gene ID: 102558680, updated on 6-Jun-2024

Summary

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Gene symbol
PIGN
Gene description
phosphatidylinositol glycan anchor biosynthesis class N
Locus tag
Y1Q_0008089
See related
EnsemblRapid:ENSAMIG00015002925
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PIGN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 3 NC_081826.1 (125537711..125708283, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710615.1 (35774472..35937276, complement)

Chromosome 3 - NC_081826.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 152 Neighboring gene U1 spliceosomal RNA Neighboring gene RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing Neighboring gene uncharacterized LOC132249376 Neighboring gene TNF receptor superfamily member 11a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannose-ethanolamine phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI ethanolamine phosphate transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081826.1 Reference rAllMis1 Primary Assembly

    Range
    125537711..125708283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059724379.1 → XP_059580362.1  GPI ethanolamine phosphate transferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A151NFE4

  2. XM_006258414.4 → XP_006258476.2  GPI ethanolamine phosphate transferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A151NFE4
    Related
    ENSAMIP00015003609.1, ENSAMIT00015005235.1
    Conserved Domains (3) summary
    COG1524
    Location:14 → 282
    Npp1; Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily [General function prediction only]
    pfam04987
    Location:433 → 885
    PigN; Phosphatidylinositolglycan class N (PIG-N)
    cd16020
    Location:42 → 347
    GPI_EPT_1; GPI ethanolamine phosphate transferase 1; PIG-N

  3. XM_059724376.1 → XP_059580359.1  GPI ethanolamine phosphate transferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A151NFE4
    Related
    ENSAMIP00015003612.1, ENSAMIT00015005239.1

  4. XM_059724377.1 → XP_059580360.1  GPI ethanolamine phosphate transferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A151NFE4

  5. XM_059724378.1 → XP_059580361.1  GPI ethanolamine phosphate transferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A151NFE4

  6. XM_059724381.1 → XP_059580364.1  GPI ethanolamine phosphate transferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A151NFE4

  7. XM_059724380.1 → XP_059580363.1  GPI ethanolamine phosphate transferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A151NFE4

RNA

  1. XR_009460852.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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