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PKD1 polycystin 1, transient receptor potential channel interacting [ Alligator mississippiensis (American alligator) ]

Gene ID: 102558410, updated on 8-May-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
Locus tag
Y1Q_0014367
See related
EnsemblRapid:ENSAMIG00015017819
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
46
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 13 NC_081836.1 (57602080..57693209, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711567.1 (2524234..2578591, complement)

Chromosome 13 - NC_081836.1Genomic Context describing neighboring genes Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2 Neighboring gene RAB26, member RAS oncogene family Neighboring gene uncharacterized LOC109284877 Neighboring gene small nucleolar RNA SNORD60

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081836.1 Reference rAllMis1 Primary Assembly

    Range
    57602080..57693209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059716463.1 → XP_059572446.1  polycystin-1 isoform X2

    Related
    ENSAMIP00015024057.1, ENSAMIT00015033724.1

  2. XM_059716462.1 → XP_059572445.1  polycystin-1 isoform X1

Nucleotide Protein
Heading Accession and Version

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