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ACAN aggrecan [ Alligator mississippiensis (American alligator) ]

Gene ID: 102558388, updated on 8-May-2024

Summary

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Gene symbol
ACAN
Gene description
aggrecan
Locus tag
Y1Q_0001378
See related
EnsemblRapid:ENSAMIG00015011005
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See ACAN in Genome Data Viewer
Location:
chromosome: 11
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 11 NC_081834.1 (14393400..14470448)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713709.1 (12052875..12129243)

Chromosome 11 - NC_081834.1Genomic Context describing neighboring genes Neighboring gene DET1 partner of COP1 E3 ubiquitin ligase Neighboring gene apoptosis enhancing nuclease Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene milk fat globule EGF and factor V/VIII domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081834.1 Reference rAllMis1 Primary Assembly

    Range
    14393400..14470448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019477903.2 → XP_019333448.2  aggrecan core protein isoform X1

    Related
    ENSAMIP00015013949.1, ENSAMIT00015020143.1

  2. XM_059714591.1 → XP_059570574.1  aggrecan core protein isoform X2

    Related
    ENSAMIP00015013953.1, ENSAMIT00015020147.1
Nucleotide Protein
Heading Accession and Version

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