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PMM1 phosphomannomutase 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102558305, updated on 8-May-2024

Summary

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Gene symbol
PMM1
Gene description
phosphomannomutase 1
Locus tag
Y1Q_0024025
See related
EnsemblRapid:ENSAMIG00015024238
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PMM1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (97124906..97141389)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710370.1 (1106083..1123015)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109283613 Neighboring gene X-ray repair cross complementing 6 Neighboring gene histone H4-like Neighboring gene desumoylating isopeptidase 1 Neighboring gene cold shock domain containing C2 Neighboring gene RNA polymerase III subunit H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphomannomutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphomannomutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    97124906..97141389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014607491.3 → XP_014462977.1  phosphomannomutase 1

    UniProtKB/TrEMBL
    A0A151NHF5
    Related
    ENSAMIP00015033446.1, ENSAMIT00015045953.1
    Conserved Domains (2) summary
    TIGR01484
    Location:15 → 236
    HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB
    pfam03332
    Location:34 → 254
    PMM; Eukaryotic phosphomannomutase
Nucleotide Protein
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Gene LinkOut

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